Bacteria encode post-mortem protein catabolism that enables altruistic nutrient recycling

Gibson, Savannah E. R.; Frost, Isabella; Hierons, Stephen J.; Moses, Tessa; Poon, Wilson C. K.; West, Stuart A.; Cann, Martin J.

Abstract

Bacterial death is critical in nutrient recycling. However, the underlying mechanisms that permit macromolecule recycling after bacterial death are largely unknown. We demonstrate that bacteria encode post-mortem protein catabolism via Lon protease released from the dead bacteria. Growth assays reveal that the lysate of Lon protease-null bacteria does not provide a growth benefit to wild type cells. This deficiency is reversed with exogenous recombinant Lon protease, confirming its post-mortem role and is independent of Lon ATPase activity. Biochemistry, growth assays and metabolomics demonstrate that Lon protease facilitates peptide nutrient release, benefitting living cells and acting as a cooperative public good. We also show that the production of Lon protease cannot be explained by a personal benefit to living cells. Although Lon protease can also provide a benefit to living cells under stressful conditions by helping control protein quality, this private benefit does not outweigh the cost under the conditions examined. These results suggest that Lon protease represents a post-mortem adaptation that can potentially be explained by considering the post-mortem indirect benefit to other cells (kin selection). This discovery highlights an unexpected post-mortem biochemistry, reshaping our understanding of nutrient recycling.

Citation

Gibson, S. E. R., Frost, I., Hierons, S. J., Moses, T., Poon, W. C. K., West, S. A., & Cann, M. J. (2025). Bacteria encode post-mortem protein catabolism that enables altruistic nutrient recycling. Nature Communications, 16, Article 1400. https://doi.org/10.1038/s41467-025-56761-6

• Journal Article Type: Article
• Acceptance Date: Jan 27, 2025
• Online Publication Date: Feb 13, 2025
• Publication Date: Feb 13, 2025
• Deposit Date: Mar 5, 2025
• Publicly Available Date: Mar 5, 2025
• Journal: Nature Communications
• Electronic ISSN: 2041-1723
• Publisher: Nature Research
• Peer Reviewed: Peer Reviewed
• Volume: 16
• Article Number: 1400
• DOI: https://doi.org/10.1038/s41467-025-56761-6
• Public URL: https://durham-repository.worktribe.com/output/3487252