Dataset of 130 metagenome-assembled genomes of healthy and diseased broiler chicken caeca from Pakistan

Ameer, Aqsa; Saleem, Farrukh; Keating, Ciara; Gundogdu, Ozan; Ijaz, Umer Zeeshan; Javed, Sundus

Abstract

This article presents metagenomic-assembled genomes (MAGs) of prokaryotic organisms originating from chicken caeca. The samples originate from broiler chickens, one group was infected with Newcastle Disease Virus (NDV) and one uninfected control group. There were four birds per group. Both groups were raised on commercially available antibiotic free feed under a semi-controlled setup. The binning step of the samples identified 130 MAGs with ≥50% completion, and ≤10% contamination. The data presented includes sequences in FASTA format, tables of functional annotation of genes, and data from two different approaches for phylogenetic tree construction using these MAGs. Major geochemical cycles at community level including carbon, sulfur, and nitrogen cycles are also presented.

Citation

Ameer, A., Saleem, F., Keating, C., Gundogdu, O., Ijaz, U. Z., & Javed, S. (2024). Dataset of 130 metagenome-assembled genomes of healthy and diseased broiler chicken caeca from Pakistan. Data in Brief, 54, Article 110487. https://doi.org/10.1016/j.dib.2024.110487

• Journal Article Type: Article
• Acceptance Date: Apr 25, 2024
• Online Publication Date: Apr 1, 2024
• Publication Date: 2024-06
• Deposit Date: May 17, 2024
• Publicly Available Date: May 17, 2024
• Journal: Data in Brief
• Electronic ISSN: 2352-3409
• Publisher: Elsevier
• Peer Reviewed: Peer Reviewed
• Volume: 54
• Article Number: 110487
• DOI: https://doi.org/10.1016/j.dib.2024.110487
• Public URL: https://durham-repository.worktribe.com/output/2437389