Loss-Modified Transformer-Based U-Net for Accurate Segmentation of Fluids in Optical Coherence Tomography Images of Retinal Diseases.

Darooei, Reza; Nazari, Milad; Kafieh, Rahle; Rabbani, Hossein

Abstract

Optical coherence tomography (OCT) imaging significantly contributes to ophthalmology in the diagnosis of retinal disorders such as age-related macular degeneration and diabetic macular edema. Both diseases involve the abnormal accumulation of fluids, location, and volume, which is vitally informative in detecting the severity of the diseases. Automated and accurate fluid segmentation in OCT images could potentially improve the current clinical diagnosis. This becomes more important by considering the limitations of manual fluid segmentation as a time-consuming and subjective to error method. Deep learning techniques have been applied to various image processing tasks, and their performance has already been explored in the segmentation of fluids in OCTs. This article suggests a novel automated deep learning method utilizing the U-Net structure as the basis. The modifications consist of the application of transformers in the encoder path of the U-Net with the purpose of more concentrated feature extraction. Furthermore, a custom loss function is empirically tailored to efficiently incorporate proper loss functions to deal with the imbalance and noisy images. A weighted combination of Dice loss, focal Tversky loss, and weighted binary cross-entropy is employed. Different metrics are calculated. The results show high accuracy (Dice coefficient of 95.52) and robustness of the proposed method in comparison to different methods after adding extra noise to the images (Dice coefficient of 92.79). The segmentation of fluid regions in retinal OCT images is critical because it assists clinicians in diagnosing macular edema and executing therapeutic operations more quickly. This study suggests a deep learning framework and novel loss function for automated fluid segmentation of retinal OCT images with excellent accuracy and rapid convergence result. [Abstract copyright: Copyright: © 2023 Journal of Medical Signals & Sensors.]

Citation

Darooei, R., Nazari, M., Kafieh, R., & Rabbani, H. (2023). Loss-Modified Transformer-Based U-Net for Accurate Segmentation of Fluids in Optical Coherence Tomography Images of Retinal Diseases. Journal of Medical Signals and Sensors, 13(4), 253-260. https://doi.org/10.4103/jmss.jmss_52_22

• Journal Article Type: Article
• Acceptance Date: Apr 6, 2023
• Online Publication Date: Aug 31, 2023
• Publication Date: Aug 31, 2023
• Deposit Date: Feb 26, 2024
• Publicly Available Date: Feb 26, 2024
• Journal: Journal of medical signals and sensors
• Electronic ISSN: 2228-7477
• Publisher: Medknow Publications
• Peer Reviewed: Peer Reviewed
• Volume: 13
• Issue: 4
• Pages: 253-260
• DOI: https://doi.org/10.4103/jmss.jmss_52_22
• Keywords: optical coherence tomography, Customized loss function, deep learning, fluid accumulation, semantic segmentation
• Public URL: https://durham-repository.worktribe.com/output/1868290