Professor Magnus Bordewich m.j.r.bordewich@durham.ac.uk
Professor
Traditional “distance based methods” reconstruct a phylogenetic tree from a matrix of pair-wise distances between taxa. A phylogenetic network is a generalisation of a phylogenetic tree that can describe evolutionary events such as reticulation and hybridisation that are not tree-like. Although evolution has been known to be more accurately modelled by a network than a tree for some time, only recently have efforts been made to directly reconstruct a phylogenetic network from sequence data, as opposed to reconstructing several trees first and then trying to combine them into a single coherent network. In this work we present a generalisation of the UPGMA algorithm for ultrametric tree reconstruction which can accurately reconstruct ultrametric tree-child networks from the set of distinct distances between each pair of taxa.
Bordewich, M., & Tokac, N. (2016). An algorithm for reconstructing ultrametric tree-child networks from inter-taxa distances. Discrete Applied Mathematics, 213, 47-59. https://doi.org/10.1016/j.dam.2016.05.011
Journal Article Type | Article |
---|---|
Acceptance Date | May 12, 2016 |
Online Publication Date | Jun 11, 2016 |
Publication Date | Nov 20, 2016 |
Deposit Date | May 12, 2016 |
Publicly Available Date | Jun 11, 2017 |
Journal | Discrete Applied Mathematics |
Print ISSN | 0166-218X |
Electronic ISSN | 1872-6771 |
Publisher | Elsevier |
Peer Reviewed | Peer Reviewed |
Volume | 213 |
Pages | 47-59 |
DOI | https://doi.org/10.1016/j.dam.2016.05.011 |
Public URL | https://durham-repository.worktribe.com/output/1382185 |
Accepted Journal Article
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Publisher Licence URL
http://creativecommons.org/licenses/by-nc-nd/4.0/
Copyright Statement
© 2016 This manuscript version is made available under the CC-BY-NC-ND 4.0 license http://creativecommons.org/licenses/by-nc-nd/4.0/
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