Stokesian Dynamics in Python

Townsend, Adam

Abstract

This is a Python 3 implementation of the Stokesian Dynamics method for polydisperse spheres suspended in a 3D Newtonian background fluid. The fluid-filled domain may be unbounded or a periodic cube. Physical setups and custom forces on the particles are easily implemented using Python; meanwhile, the computational speed is handled by Numba.

This software is aimed at researchers in low Reynolds number fluid dynamics who are looking for an easy-to-use yet flexible implementation of this popular method. The startup cost of writing a Stokesian Dynamics code is high, given the need for pre-computed resistance scalars.

Several minus sign errors in the literature also need resolving first. These have been resolved and validated before being implemented in this code. The hope is that many months of future researchers’ time (often PhD students’ time) will be saved by no longer reinventing the wheel.

Citation

Townsend, A. (2024). Stokesian Dynamics in Python. The Journal of Open Source Software, 9(94), Article 6011. https://doi.org/10.21105/joss.06011

• Journal Article Type: Article
• Acceptance Date: Feb 22, 2024
• Online Publication Date: Feb 22, 2024
• Publication Date: Feb 22, 2024
• Deposit Date: Feb 22, 2024
• Publicly Available Date: Feb 23, 2024
• Journal: The Journal of Open Source Software
• Electronic ISSN: 2475-9066
• Publisher: Open Journals
• Peer Reviewed: Peer Reviewed
• Volume: 9
• Issue: 94
• Article Number: 6011
• DOI: https://doi.org/10.21105/joss.06011
• Public URL: https://durham-repository.worktribe.com/output/2272691