All Outputs (2)

Accurate Morphology Preserving Segmentation of Overlapping Cells based on Active Contours (2016)
Journal Article
Molnar, C., Jermyn, I. H., Kato, Z., Rahkama, V., Östling, P., Mikkonen, P., …Horvath, P. (2016). Accurate Morphology Preserving Segmentation of Overlapping Cells based on Active Contours. Scientific Reports, 6, Article 32412. https://doi.org/10.1038/srep32412

The identification of fluorescently stained cell nuclei is the basis of cell detection, segmentation, and feature extraction in high content microscopy experiments. The nuclear morphology of single cells is also one of the essential indicators of phe... Read More about Accurate Morphology Preserving Segmentation of Overlapping Cells based on Active Contours.

Elastic shape analysis of surfaces and images (2016)
Book Chapter
Kurtek, S., Jermyn, I., Xie, Q., & Klassen, E. (2016). Elastic shape analysis of surfaces and images. In P. K. Turaga, & A. Srivastava (Eds.), Riemannian computing and statistical inferences in computer vision (257-277). Springer Verlag. https://doi.org/10.1007/978-3-319-22957-7_12

We describe two Riemannian frameworks for statistical shape analysis of parameterized surfaces. These methods provide tools for registration, comparison, deformation, averaging, statistical modeling, and random sampling of surface shapes. A crucial p... Read More about Elastic shape analysis of surfaces and images.